Electrostatic Complementarity in Structure-Based Drug Design

J Med Chem. 2022 Jun 9;65(11):7476-7488. doi: 10.1021/acs.jmedchem.2c00164. Epub 2022 May 5.

Abstract

Optimization of electrostatic complementarity is an important strategy in structure-based drug discovery for improving the affinity of molecules against a specific protein target. In this Miniperspective we identify examples where deliberate optimization of protein-ligand electrostatic complementarity or intramolecular electrostatic interactions gave improvements in target affinity (up to 250-fold), physicochemical properties, in vitro properties, and off-target selectivity. We also look retrospectively at a series of factor Xa inhibitors that show an almost 8000-fold range in potency that can be correlated with the calculated electrostatic potential (ESP) surfaces. Recent developments using a graph-convolutional deep neural network to rapidly generate high quality ESP surfaces have the potential to make this useful tool more accessible for a wider audience within the field of medicinal chemistry.

Publication types

  • Review

MeSH terms

  • Drug Design*
  • Ligands
  • Proteins* / chemistry
  • Retrospective Studies
  • Static Electricity

Substances

  • Ligands
  • Proteins